There’s something absolutely magical about a bowl of Butternut Squash Macaroni and Cheese. The blend of creamy, cheesy goodness and naturally sweet, golden butternut squash creates a comfort dish that’s as nourishing as it is satisfying. With each bite, you’ll enjoy a lush texture, vibrant color, and layers of flavor that remind you just how homemade food can turn any day around. Whether you’re making it for family, a cozy dinner for two, or as a potluck crowd-pleaser, this Butternut Squash Macaroni and Cheese promises both nostalgia and just the right touch of something special.

Butternut Squash Macaroni and Cheese Recipe - Recipe Image

Ingredients You’ll Need

All you need are a handful of staples to create the bold, creamy magic that is Butternut Squash Macaroni and Cheese. Each ingredient plays a starring role, so selecting them carefully will reward you with maximum flavor and that irresistible, silky sauce!

Elbow Macaroni (12 ounces): Perfect for catching all that luscious cheese sauce in their curves; shells or other small shapes work too!
Butternut Squash (2 cups, peeled and cubed): This vegetable brings natural sweetness, gorgeous color, and added creaminess without extra heaviness.
Milk (2 cups, whole or 2%): Adds classic richness and keeps the sauce beautifully smooth.
Unsalted Butter (2 tablespoons): Essential for creating a velvety roux and that buttery flavor in every bite.
All-Purpose Flour (2 tablespoons): Works with butter to make the roux that thickens the cheese sauce to perfection.
Sharp Cheddar Cheese (2 cups, shredded): The main flavor backbone—go for freshly shredded for that dreamy melt.
Parmesan Cheese (1/2 cup, grated): Adds a nutty, savory depth and a bit of salty punch.
Garlic Powder (1/2 teaspoon): Gives the sauce subtle warmth and complexity without overwhelming the squash.
Onion Powder (1/2 teaspoon): Enhances the savory profile and balances out the sweetness of the squash.
Ground Nutmeg (1/4 teaspoon): A pinch of nutmeg elevates the sauce with gentle, aromatic spice and coziness.
Salt and Pepper (to taste): Brings all the flavors together—season generously!
Chopped Fresh Parsley (for garnish): Brings a pop of color and freshness to finish the dish beautifully.

How to Make Butternut Squash Macaroni and Cheese

Step 1: Cook the Pasta

Bring a large pot of salted water to a rolling boil, then add your pasta. Cook until al dente—this way it’ll absorb just the right amount of sauce later. Drain the pasta and set it aside while the rest of your Butternut Squash Macaroni and Cheese comes together.

Step 2: Prepare the Butternut Squash Puree

While the pasta is cooking, toss the cubed butternut squash into a saucepan, cover with water, and bring it to a lively boil. Let it simmer for about 10 to 12 minutes until fork-tender, then drain and transfer the squash to a blender. Pour in the milk and blend until the mixture is ultra-smooth and creamy. This vibrant puree forms the backbone of your cheese sauce.

Step 3: Make a Simple Roux

In a large pot over medium heat, melt the butter until it’s gently bubbling. Whisk in the flour and let it cook for one to two minutes, stirring constantly. This step is quick but important—it cooks off the raw flour taste and creates the base to help your sauce stay thick and luscious.

Step 4: Build the Sauce

Slowly whisk the creamy butternut squash puree into your roux. Let this mixture cook for another two to three minutes, stirring gently, until it starts to thicken slightly. Now for the best part: reduce the heat, add the shredded cheddar, Parmesan, garlic powder, onion powder, nutmeg, salt, and pepper. Stir until the cheese melts completely, transforming the sauce into pure cheesy silk.

Step 5: Combine and Serve

Add the cooked pasta straight into the sauce pot and toss gently, making sure every noodle is luxuriously coated. Once it’s all steaming and saucy, scoop it into bowls, sprinkle with chopped parsley, and serve warm. Your Butternut Squash Macaroni and Cheese is ready to steal the show!

How to Serve Butternut Squash Macaroni and Cheese

Garnishes

A sprinkle of chopped fresh parsley on top will brighten the rich colors, while a handful of toasted breadcrumbs gives your Butternut Squash Macaroni and Cheese added crunch. If you love a little kick, a pinch of cayenne can make every bite pop.

Side Dishes

Pair this comforting dish with a simple green salad tossed in tangy vinaigrette or roasted broccoli for balance. Warm, crusty bread always goes beautifully with creamy pasta, making it a full, satisfying meal.

Creative Ways to Present

For a fun twist, spoon your Butternut Squash Macaroni and Cheese into individual ramekins, sprinkle with extra cheese and breadcrumbs, then broil briefly for a bubbly, golden crust. Or serve in a big, family-style baking dish so everyone can dig in together—total comfort food style!

Make Ahead and Storage

Storing Leftovers

Once cooled, leftover Butternut Squash Macaroni and Cheese can be stored in an airtight container in the refrigerator for up to three days. The sauce may thicken slightly, but a splash of milk during reheating will bring it right back to life.

Freezing

This dish freezes surprisingly well! Cool completely, then portion into freezer-safe containers. For best texture, freeze without garnishes and consume within two months. Thaw overnight in the refrigerator before reheating.

Reheating

When ready to enjoy, gently reheat the macaroni and cheese on the stove or in the microwave. If it looks a little thick, just stir in a bit of milk to regain that creamy, dreamy consistency you love.

FAQs

Can I use frozen butternut squash?

Absolutely! Frozen cubed butternut squash is a huge time-saver. Just boil it until soft, then proceed with the recipe as usual for a silky, flavorful puree.

What’s the best pasta shape for Butternut Squash Macaroni and Cheese?

Elbow macaroni is a classic, but shells, penne, or even cavatappi work nicely—they hold onto the sauce just as well and give you plenty of creamy goodness in every bite.

How do I make this recipe gluten-free?

Swap the pasta for your favorite gluten-free variety, and use a 1-to-1 gluten-free flour blend for the roux. The rest of the ingredients are naturally gluten-free, making this a simple adaptation!

Can I add extra veggies or protein?

Definitely! Stir in steamed peas, sautéed spinach, or roasted broccoli for color and texture. For extra protein, fold in cooked shredded chicken or crispy pancetta just before serving.

Is Butternut Squash Macaroni and Cheese suitable for meal prep?

Yes, the dish holds up well for several days, making it ideal for lunches and quick dinners. Store in single-serve containers and add a splash of milk when reheating for the best texture.

Final Thoughts

I hope you’re as excited as I am to dig into a bowl of Butternut Squash Macaroni and Cheese—rich, cheesy, and so full of comfort. Whether it’s a weeknight treat or the highlight of your next gathering, this recipe deserves a spot in your rotation. Give it a try and watch those empty bowls appear!

Butternut Squash Macaroni and Cheese Recipe

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4.5 from 22 reviews

Author: Emma
Total Time: 40 minutes
Yield: 6 servings 1x
Diet: Vegetarian

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Description

Indulge in this creamy and flavorful Butternut Squash Macaroni and Cheese that offers a healthier twist to the classic dish. The velvety butternut squash sauce blends perfectly with the rich cheeses, creating a comforting and satisfying meal.

Ingredients

Scale

Main Ingredients:

12 ounces elbow macaroni or pasta of choice
2 cups peeled and cubed butternut squash
2 cups milk (whole or 2%)
2 tablespoons unsalted butter
2 tablespoons all-purpose flour
2 cups shredded sharp cheddar cheese
1/2 cup grated Parmesan cheese
1/2 teaspoon garlic powder
1/2 teaspoon onion powder
1/4 teaspoon ground nutmeg
Salt and pepper to taste
Chopped fresh parsley for garnish

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Instructions

Cook the Pasta: Boil salted water and cook pasta until al dente. Drain and set aside.
Prepare the Squash Puree: Boil squash until tender, then blend with milk until smooth.
Make the Cheese Sauce: Melt butter, whisk in flour, then add squash puree and cheese. Season with spices.
Combine and Serve: Mix cooked pasta with sauce until coated. Garnish with parsley and serve.